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R784-1FOX Results
Target Conformations
Native State (pdb)
Figure Not Available Conf.#2 (pdb)

Target Conformations
Native State (pdb)	Conf.#2 (pdb)

The roadmap is an approximation of the protein's energy landscape that consists of thousands of representative pathways to (and between) the above target conformation(s). Below we provide Roadmap Analysis and Individual Pathway Analysis.

Roadmap Analysis

Results providing global information about the entire roadmap including Ramachandran and potential energy vs RMSD (to the first target conformation) plots of all conformations in the roadmap and a secondary structure formation order (SSFO) classification of all the pathways in the roadmap (to the first target conformation).

Ramachandran Plot	Potential-RMSD Plot	Rigidity Map Plot: Target 0	Cluster Map Plot: Target 0	Rigidity Map Plot: Target 1	Cluster Map Plot: Target 1
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Individual Pathway Analysis

Results providing information about individual pathways are presented for two types of pathways: pathways between pairs of target conformations and a representative pathway for each secondary structure formation order (SSFO) found in the roadmap. For each pathway, we provide information about the start & final conformations, profiles of the potential energy and the number of native contacts of the intermediate conformations along the pathway, a timed contact map for the pathway, and animations of the pathway.

Pathway Name

Start

Final

Energy Profile

DOF Profile

RMSD Profile

Relative RMSD Profile

Rigidity Distance

Relative Rigidity Distance

Cluster Distance

Relative Cluster Distance

Contact Profile: all